PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014507
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NF-YB
Protein Properties Length: 225aa    MW: 24739.5 Da    PI: 8.2196
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014507genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB179.72.5e-5632127297
      NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                +eqdrflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plk+yl+kyre+e+ek
  Cla014507  32 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEK 127
                89*******************************************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-5428142IPR009072Histone-fold
SuperFamilySSF471131.21E-4034136IPR009072Histone-fold
PfamPF008082.0E-2737101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.1E-196583No hitNo description
PROSITE patternPS0068506884IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.1E-1984102No hitNo description
PRINTSPR006151.1E-19103121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSGHKRNFTT TAAAVSPIGS PTSGNISDSS TKEQDRFLPI ANVSRIMKKS LPANAKISKE  60
AKETVQECVS EFISFITGEA SDKCQREKRK TINGDDLLWA MTTLGFENYV GPLKIYLNKY  120
RETEEEKHSL ARQDDPSLSP AKSATEQIIG GKSANSVMDF QNFNPGFYSF GNQNQNQGNQ  180
KSFNIIDGVG FGESLRSFNM NGVHENGEGN RARAMAAHLQ QSSGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4832122292Transcription factor HapC (Eurofung)
4g92_B2e-4832122292Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149164.11e-156PREDICTED: nuclear transcription factor Y subunit B-1-like
RefseqXP_008453748.11e-156PREDICTED: nuclear transcription factor Y subunit B-like
TrEMBLA0A0A0KXV61e-156A0A0A0KXV6_CUCSA; Uncharacterized protein
STRINGPOPTR_0005s08510.14e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-64nuclear factor Y, subunit B3